I voted for the last option: "Do not think it would matter."
The probability of the team that score the most and concede the least throughout an entire season being champions is probably 99%. The bizarre 2-trophy situation before the final game this season is only a freak case, an exception rather than the norm; possible to happen again but not probable. And it proves true again after yesterday, isn't it?
So I doubt there is any necessity at all to cater to the exception.